This workflow automates the evaluation of quality statistics on your genomes, Metagenome-Assembled Genomes (MAGs), or Single-Cell Amplified Genomes (SAGs).
To execute the workflow, run:
miga quality_wf -o my_project path/to/mags/*.fasta
For additional options, run:
miga quality_wf -h
Once your run is complete, you may expect the standard summaries for
ssu. In addition, if you pass the option
--mytaxa-scan, you can expect the subdirectory
mytaxa_scan including PDF reports for each input genome.