MiGA Manual
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  • Introduction
  • Part I: What is MiGA?
    • How can MiGA help me?
    • Who is using MiGA?
    • Who is behind MiGA?
    • Definitions
  • Part II: Getting started
    • Requirements
      • Using Homebrew
      • Using apt-get
      • Using Conda
      • Installing from source
      • MyTaxa Utils
    • Installation
    • MiGA types
    • Input data
    • Distances
    • Clustering
  • Part III: Interfaces
    • MiGA API
    • MiGA CLI
    • MiGA Web
  • Part IV: Deploying examples
    • RefSeq in MiGA
    • Build a clade collection
    • Launching daemons
    • Setting up MiGA in a cluster
  • Part V: Additional details
    • Advanced configuration
    • MiGA workflow
    • Metadata
    • External Software
  • Part VI: Workflows
    • Quality
    • Dereplicate
    • Classify
    • Preprocess
    • Index
    • Summaries
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  • MiGA API
  • MiGA CLI
  • MiGA Web
  • MiGA Names
  • MiGA Dates
  1. Part I: What is MiGA?

Definitions

MiGA API

Ruby Application Program Interface to MiGA.

MiGA CLI

Command Line Interface to MiGA.

MiGA Web

Web-based interface to MiGA.

MiGA Names

MiGA names are non-empty strings composed exclusively of alphanumerics and underscores. All the dataset names in MiGA must conform to this restriction.

MiGA Dates

The official format in which MiGA represents date/times is the default of Ruby's Time.now.to_s, as generated by the CLI action miga date. In the *nix date utility this corresponds to the format: +%Y-%m-%d %H:%M:%S %z.

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Last updated 4 years ago