MyTaxa Utils
The MyTaxa utilities are optional, but without them the MyTaxa and MyTaxa scan analyses are disabled. Note that MyTaxa requires about 15Gb of disk available to store the database.
We will install the necessary software in $HOME/apps. You can change this directory if you prefer:
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[[ -d $HOME/apps/bin ]] || mkdir -p $HOME/apps/bin
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cd $HOME/apps
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echo 'export PATH=$HOME/apps/bin:$PATH' >> ~/.miga_modules
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MyTaxa

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curl -L \
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https://github.com/luo-chengwei/MyTaxa/archive/master.tar.gz | tar zx
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cd MyTaxa-master
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make
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python2 utils/download_db.py
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echo 'export PATH="'$PWD':$PATH"' >> ~/.miga_modules
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cd ..
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Krona

If you followed the instructions for conda or Homebrew, you already have Krona. If you still need to install Krona, simply execute:
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curl -L \
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https://github.com/marbl/Krona/archive/master.tar.gz | tar zx
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( cd Krona-master/KronaTools && ./install.pl --prefix ../.. )
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Last modified 4mo ago
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Contents
MyTaxa
Krona