haai_p=no
. This field also controls the Software used: blast+
(default), blast
, blat
, or diamond
.aai_save_rbm=false
or aai_save_rbm=true
, respectively. The Software used as a search engine can be controlled using the metadata field haai_p
: blast+
(default), blast
, blat
, or diamond
. Workflows use blast+
by default, or diamond
if the flag --fast
is passed (whenever available).haai_p
: blast+
(default), blast
, blat
, or fastani
. Workflows use blast+
by default, or fastani
if the flag --fast
is passed (whenever available).aai
table holds the metric values, including: the name of the genomes compared seq1
and seq2
, the AAI or hAAI as percentage aai
, the standard deviation across proteins when available sd
, the total number of RBMs n
, and the smaller number of proteins from the two genomes omega
. The rbm
table holds the RBMs for AAI (whenever available if stored) and is always empty for hAAI.ani
table holds the metric values, including: the name of the genomes compared seq1
and seq2
, the ANI as percentage ani
, the standard deviation across fragments when available sd
, the total number of RBM fragments n
, and the smaller number of fragments from the two genomes omega
. The tables rbm
and regions
are always empty.