MyTaxa Utils

The MyTaxa utilities are optional, but without them the MyTaxa and MyTaxa scan analyses are disabled. Note that MyTaxa requires about 15Gb of disk available to store the database.

We will install the necessary software in $HOME/apps. You can change this directory if you prefer:

[[ -d $HOME/apps/bin ]] || mkdir -p $HOME/apps/bin
cd $HOME/apps
echo 'export PATH=$HOME/apps/bin:$PATH' >> ~/.miga_modules

MyTaxa

curl -L \
  https://github.com/luo-chengwei/MyTaxa/archive/master.tar.gz | tar zx
cd MyTaxa-master
make
python2 utils/download_db.py
curl -O \
  http://enve-omics.ce.gatech.edu/data/public_mytaxa/AllGenomes.faa.dmnd
echo 'export PATH='$PWD':$PATH' >> ~/.miga_modules
cd ..

Krona

If you followed the instructions for conda, you already have Krona. If you still need to install Krona, simply execute:

curl -L \
  https://github.com/marbl/Krona/archive/master.tar.gz | tar zx
( cd Krona-master/KronaTools && ./install.pl --prefix ../.. )